PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g13410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 288aa    MW: 32651.8 Da    PI: 7.4322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g13410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +v+++G g+W++++++ g+ R++k+c++rw +yl
  Vradi11g13410.1 14 KGPWTPEEDNKLLAYVEKHGHGNWRSVPAKAGLERCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.71.8e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +Ed  +++++++lG++ W+ Ia++++  Rt++++k++w++
  Vradi11g13410.1  67 RGNFSSDEDHTIIQLHALLGNK-WSIIAAHLP-QRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-26664IPR009057Homeodomain-like
PROSITE profilePS5129426.356965IPR017930Myb domain
SuperFamilySSF466898.27E-3311108IPR009057Homeodomain-like
SMARTSM007172.9E-161363IPR001005SANT/Myb domain
PfamPF002493.2E-181461IPR001005SANT/Myb domain
CDDcd001671.19E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2565117IPR009057Homeodomain-like
SMARTSM007171.1E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.4666116IPR017930Myb domain
PfamPF002492.6E-1467110IPR001005SANT/Myb domain
CDDcd001673.77E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGKMRCCEKV GFKKGPWTPE EDNKLLAYVE KHGHGNWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF SSDEDHTIIQ LHALLGNKWS IIAAHLPQRT DNEIKNYWNT NIKKRLIRMG  120
LDPLTHKPIK RNNFEDYGVG HHEQSKDTTN MDHVAQWENA RLEAEARGSM LQVESHSSHH  180
PQLMLTKIPT QLSPSSSDSL SIKHNTVYNM YDLILATNHD LPSPVSTFSR TSLSSEGDFN  240
VSETSFQIIQ DRVSNLQDDE ITVAVEAFTT ASCESIQELL RGSTLTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g13410.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519832.20.0transcription factor MYB16-like
SwissprotQ9LXF15e-83MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A1S3VNR80.0A0A1S3VNR8_VIGRR; transcription factor MYB16-like
STRINGGLYMA02G12254.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-85myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]