PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g13390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 319aa    MW: 35689.6 Da    PI: 8.2894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g13390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-151478148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.................kgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+++v+++G g+W++++++ g                 + R++k+c++rw +yl
  Vradi11g13390.1 14 KGPWTPDEDKKLLHYVRMHGHGNWRSVPAKAGnnttslypffsiidcacLQRCGKSCRLRWINYL 78
                     79*************************************************************97 PP
2Myb_DNA-binding521.6e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEd ++++++++lG++ W+ Ia++++  Rt++++k++w++
  Vradi11g13390.1  84 RGNFSAEEDRIIIQLHALLGNR-WSIIAAHLP-QRTDNEIKNYWNT 127
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24581IPR009057Homeodomain-like
PROSITE profilePS5129414.327978IPR017930Myb domain
SuperFamilySSF466897.05E-2911125IPR009057Homeodomain-like
SMARTSM007178.3E-121380IPR001005SANT/Myb domain
PfamPF002493.9E-151478IPR001005SANT/Myb domain
CDDcd001674.11E-101678No hitNo description
PROSITE profilePS5129425.6979133IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2682134IPR009057Homeodomain-like
SMARTSM007172.9E-1683131IPR001005SANT/Myb domain
PfamPF002493.9E-1584127IPR001005SANT/Myb domain
CDDcd001678.25E-1286129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPD EDKKLLHYVR MHGHGNWRSV PAKAGNNTTS LYPFFSIIDC  60
ACLQRCGKSC RLRWINYLKP GIKRGNFSAE EDRIIIQLHA LLGNRWSIIA AHLPQRTDNE  120
IKNYWNTNIK KRLIRMGLDP ITHKTIKKNT FEPFGGGHDN PKDSINICHE AQWESARLEA  180
EARGSMLQIG SSNLSGLILR KIPTEPYLSS HSVSTEHNTV YNMYALVLAP NHDFRSSVST  240
LIIPTLPAVS NTAQITNKES SLSYQSDNSI MGASGQSQKV MEGWVSNLQD DDIMVAVEAF  300
RTEGSESIEE LFNESTSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121335108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g13390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519830.10.0transcription factor MYB106-like
SwissprotQ9LE633e-77MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3VNH00.0A0A1S3VNH0_VIGRR; transcription factor MYB106-like
STRINGXP_007153565.11e-162(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-78myb domain protein 16