PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 395aa    MW: 43637.5 Da    PI: 5.4713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-1043165254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC................................................................. CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkas................................................................ 31 
                      ++ +  rE+ RRdr+N+ f+eL   l  ++                                                                
  Vradi11g11830.1  43 KVLKADREKLRRDRLNEHFQELGNTLEDSVsrrngngddgvvimmvmvvselavvvpvevmevsvvggngnnneyssndsdstgdknvtvkifm 136
                      566789**********************888*************************************************************** PP

                      ........TTS-STCHHHHHHHHHHHHHH CS
              HLH  32 ......kapskKlsKaeiLekAveYIksL 54 
                             ++ +K++Ka+iL+++v+ +k+L
  Vradi11g11830.1 137 lvelnaDPDRPKNDKATILTETVQMLKDL 165
                      *****8888888***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.62341165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-114270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-843165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-447171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-11143191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MLLTHFKHFS NQILCEHFYG REFNRERESK GEGEKEDPSA SRKVLKADRE KLRRDRLNEH  60
FQELGNTLED SVSRRNGNGD DGVVIMMVMV VSELAVVVPV EVMEVSVVGG NGNNNEYSSN  120
DSDSTGDKNV TVKIFMLVEL NADPDRPKND KATILTETVQ MLKDLTAEVN RLKTEHKALS  180
EESHELMQEK NELREEKASL KSDIENLNAQ YQQRVRIMFP WTAIDHSVVI SPPYSYPLPI  240
PIPPAPISIH PSLQPFPFFG NQNPGPIPSP CSMYVPYSTP TNNPVDPPSM LYASTSHVSN  300
QRESFSKSSG DRRPSSDAER CSESHDVATE LELKMPGSSS TQQDSTSGGR KGKHSVVRDR  360
TIIGGSAGSA SSRYSSSQGL QDSSNSVGDI PKTD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027915386.11e-153transcription factor bHLH121-like
SwissprotQ9LT234e-57BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A4D6LLZ31e-152A0A4D6LLZ3_VIGUN; Myc-type
STRINGXP_007153217.11e-143(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-40bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]