PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 507aa    MW: 55767 Da    PI: 9.4012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-055678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Vradi11g11080.1 56 FICEVCNKGFQREQNLQLHRRGH 78
                     89*******************88 PP
2zf-C2H212.10.0006132154123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Vradi11g11080.1 132 WKCDKCSKKYAVQSDWKAHSKTC 154
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.8E-55578IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00525678IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.05E-85678No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55678IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.995678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035513097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.05E-8127152No hitNo description
SMARTSM00355150132152IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAAPFSSASL FGIREEDQNQ MKQQHSSTTT PSSSSTPAAP PPQKKRRNQP GTPSKFICEV  60
CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EPKRKVYLCP EPTCVHHDPS RALGDLTGIK  120
KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC  180
DALAQESARE PPTLSSAIGN QLFGNSNNMS LGLSQNLGSQ IPSIHDQNSQ PSDLLRFCGA  240
PRTGPFDHIL PPNMASPFRP SSHQIMQLQN PPFFMPESNQ NYHDHQQGLI SNKPFQGMIQ  300
LSDLNNSNTP SASNLFNLPF LSNRGHTPNY SEEHHFNPTE GSNFFTEGTI IGTDHQTSSA  360
TAPSVFSTSL QNTTNMSHMS ATALLQKAAQ MGAASSSTNN SASSLLRSLA SKSDHRPLLS  420
AANYSNILNS SVQEMMNLPG FEAYDHGITN KEPKLSVGGS DRLTRDFLGV AQQQQQQRGF  480
NLSSLEAETN NAAPSGQSFG GGANFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35128189364Zinc finger protein JACKDAW
5b3h_F1e-35128189364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521024.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_022643150.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-112IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A1S3VSI00.0A0A1S3VSI0_VIGRR; protein indeterminate-domain 5, chloroplastic
STRINGXP_007153119.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.14e-98indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]