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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vradi11g10600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
Whirly |
| Protein Properties |
Length: 200aa MW: 22397 Da PI: 9.8458 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi11g10600.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 43.1 | 8.2e-14 | 75 | 132 | 1 | 56 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfa 56
svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a+++++ + ydW++kq+
Vradi11g10600.1 75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEEsiYDWNQKQVVQ 132
79***************************************9865444*******875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MFHIVHSLPL KHLSLPFHSF VPPKFIVPLN RNFSFIFPTS LSVRCNHSNI VEPFPPLPQY 60
PSVAELPQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVGTEE 120
SIYDWNQKQV VQDSYVFALQ MYKCVVDISL SGCLGATLGI GWEVMIRVEK EKKGRREVRP 180
NGIDHKGRTV GGRVKQAKR*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4koo_A | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_B | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_C | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| 4koo_D | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 3e-85 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
