PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g10410.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 387aa MW: 43093.8 Da PI: 6.3195

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g10410.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.1	2.9e-11	20	44	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLH+rF+ea +qLGG++ Vradi11g10410.1 20 KPRLKWTPELHQRFIEATNQLGGAD 44 79*********************97 PP
2	G2-like	36.9	8e-12	83	111	25	53
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkY 53 +AtPk+++++m+++gLtl+h+kSHLQ + Vradi11g10410.1 83 AEATPKSLMRVMGIPGLTLYHLKSHLQAF 111 57*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-23	18	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-23	85	110	IPR009057	Homeodomain-like
Pfam	PF14379	2.1E-21	159	205	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDLQNMQNQS MHFVLSTDAK PRLKWTPELH QRFIEATNQL GGADSEYNTN FINLTVSITI 60 IVIIGFCSTS YLILFFTLWH LVAEATPKSL MRVMGIPGLT LYHLKSHLQA FIPLLLGKSQ 120 QLDTSSDSKQ EDYIETKSSD GHCSREISLG AQNQITENMQ IAQALQMQME VQRKLYEQIE 180 VQKHLQLRIE AQGKYLQSVL KKAQEALAGY NSAPVGIELT KAELSQLVTI INNACPSSPI 240 SELTETRGLS LSCGDRKRDR GTMCSLESSL TSSESSGRKE EKQSMEEIEE FKSSNNASVE 300 LPLMGFHTEN KASNTGSSNE ASGRKRSAAT KSNDGRYVVE QPCGKRSGNK FRKPEMLDLN 360 SQCQIDMDST TSKTLDLNCS LNFWEP*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDLQNMQNQS MHFVLSTDAK PRLKWTPELH QRFIEATNQL GGADSEYNTN FINLTVSITI  60
IVIIGFCSTS YLILFFTLWH LVAEATPKSL MRVMGIPGLT LYHLKSHLQA FIPLLLGKSQ  120
QLDTSSDSKQ EDYIETKSSD GHCSREISLG AQNQITENMQ IAQALQMQME VQRKLYEQIE  180
VQKHLQLRIE AQGKYLQSVL KKAQEALAGY NSAPVGIELT KAELSQLVTI INNACPSSPI  240
SELTETRGLS LSCGDRKRDR GTMCSLESSL TSSESSGRKE EKQSMEEIEE FKSSNNASVE  300
LPLMGFHTEN KASNTGSSNE ASGRKRSAAT KSNDGRYVVE QPCGKRSGNK FRKPEMLDLN  360
SQCQIDMDST TSKTLDLNCS LNFWEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g10410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520124.1	0.0	myb family transcription factor PHL8 isoform X1
TrEMBL	A0A1S3VPX9	0.0	A0A1S3VPX9_VIGRR; myb family transcription factor PHL8 isoform X1
STRING	XP_007157612.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-63	G2-like family protein