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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi11g10230.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 419aa MW: 47584.7 Da PI: 7.9839 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi11g10230.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169.3 | 1.3e-52 | 1 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ pGfrFhPtdeelv +yLk+k++++++++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s
Vradi11g10230.1 1 MLPGFRFHPTDEELVGFYLKRKIQQRPFTI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 93
579**************************9.89***************8888999*************************************** PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
Vradi11g10230.1 94 SeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 128
956677***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MLPGFRFHPT DEELVGFYLK RKIQQRPFTI ELIKQLDIYK YDPWDLPKLA TTGEKEWYFY 60 CPRDRKYRNS ARPNRVTGAG FWKATGTDRP IYSSEGSKCI GLKKSLVFYK GRAAKGVKTD 120 WMMHEFRLPS LTDSLSPKCF NFQMFVISSF IDFFSLFLIM QESWAICRIF KKTNATAQRA 180 LSQSWVSSLP ETRTSDHIQT KDQNSMQFCS DISFTKKTTL ASHYFTNNYN DAQPLTPNSS 240 TTLCPLDVAS YKSIINPLLY KAFDHFPISN GDLSTSFLFS SPFDTSSDGN TNAKSTMDVS 300 SMLLNMSSSV VGDFNKTSED NTNANTSFGG LQEHGAYPIP FLREMQSTFG EQQYDNIHAL 360 VKGPNVNMPR VDDQELETVR SIGFPFNIGD AWKSNLLWDT SSFPCDLSST YSITKCYT*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-51 | 3 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 3 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 3 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 3 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-51 | 3 | 179 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 3 | 179 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |