PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09640.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 262aa    MW: 29718.9 Da    PI: 7.6542
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.7e-102042382155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Vradi11g09640.1 204 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 238
                      679*****************************885 PP
2ELK32.32.2e-11158179122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++LlrK+++++g+Lk EFs
  Vradi11g09640.1 158 ELKDRLLRKFGSHIGTLKLEFS 179
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.3E-770115IPR005540KNOX1
PfamPF037902.2E-127294IPR005540KNOX1
SMARTSM011886.5E-6158179IPR005539ELK domain
PfamPF037892.8E-8158179IPR005539ELK domain
PROSITE profilePS512139.83158178IPR005539ELK domain
PROSITE profilePS5007113.281178241IPR001356Homeobox domain
SuperFamilySSF466898.13E-20179250IPR009057Homeodomain-like
SMARTSM003892.3E-14180245IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-28183242IPR009057Homeodomain-like
CDDcd000868.38E-15190242No hitNo description
PfamPF059202.9E-18198237IPR008422Homeobox KN domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDEMYGVPDY ADKPLMTPEN LIFPPDYPAF LTAARIPIFG SDDLFSGEPS AASASPAGIP  60
RHQDDDVATT VMKAKIASHP HYPRLLQAYI DCQKRMPTAY FELVVLKNFS AKFIPVMLCL  120
LVDAKRVMNY DGGVSSDEDL STGDGDGQDG QSKGEDRELK DRLLRKFGSH IGTLKLEFSK  180
KKKKGKLPKE ARQTLLQWWN VHYKWPYPTE ADKIELAKST GLDQKQINNW FINQRKRHWK  240
PSENMQFSMM ENLNGRFLGD E*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g09640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-151AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519251.11e-150homeobox protein knotted-1-like 6 isoform X1
RefseqXP_014519252.11e-150homeobox protein knotted-1-like 6 isoform X1
RefseqXP_017426912.11e-150PREDICTED: homeobox protein knotted-1-like 6 isoform X1
SwissprotQ84JS65e-91KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0L9US681e-149A0A0L9US68_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2Y21e-149A0A0S3T2Y2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VLL21e-149A0A1S3VLL2_VIGRR; homeobox protein knotted-1-like 6 isoform X1
STRINGXP_007157365.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-76KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]