PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vradi11g09470.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 229aa MW: 25970.3 Da PI: 10.761

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g09470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	2e-10	54	111	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr++lP++ +++ +Ka++L ++++ +k+L Vradi11g09470.1 54 KKHSEAEKRRRMRINGQYETLRTILPNLIkhgeldfVMNHQ-KDKASVLAETIKQVKEL 111 68*************************98788888633333.36888888888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-11	45	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.725	51	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-8	54	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-7	54	116	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-12	55	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-8	57	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVFLLQGMQH LQSYYNSEAK MIRGGFPRPF ISRTYQTSFL KQRSKTEIKV VAAKKHSEAE 60 KRRRMRINGQ YETLRTILPN LIKHGELDFV MNHQKDKASV LAETIKQVKE LKKKVSEVEQ 120 DRCGNSSKDV VKFPSGADRL RLEKCNNEED LVKATLSCED SLGLMSAISR AMESVKTKVV 180 KAEIVSVGGR NRSVLWVQGL GNDRMGMLKS SLKIAMHKPA FKMRRSTH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g09470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014519722.1	1e-164	transcription factor bHLH131-like
TrEMBL	A0A1S3VNF6	1e-163	A0A1S3VNF6_VIGRR; transcription factor bHLH131-like
STRING	XP_007158377.1	1e-142	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	5e-40	bHLH family protein