PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g09230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 344aa    MW: 36915.6 Da    PI: 8.4813
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g09230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-393696262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +e+ lkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  Vradi11g09230.1 36 QEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVR 96
                     57899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.5E-333894IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-263994IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4324094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSSDDTPPSK PATATTTTDQ ETQSSGGRKG SSTRPQEQGL KCPRCDSPNT KFCYYNNYSL  60
TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKKVRSSRL SCDSKDSGSS SSDLGGLKFL  120
HTLPPSMDFH LGGLPFPRLH HHPPATYNQF SSFGDTSSAS SCFNLDPSPG TTSSSFAALN  180
YPFSYNGAIQ GMSAMNVHSG HASSIESLSS INQDLHWKLQ QQRLAMLFGG DNSQKDHSGS  240
GGMSPTINHL ENQTQKPQPI LFQNLEVSKA GIFPVENSRK ENGPCGDTHT PSTEWFFGNS  300
YASVTPPTAT TTSSGGPGND NASNWSSGVN AWGDVPQQYT ALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g09230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520197.10.0dof zinc finger protein DOF5.7
RefseqXP_014520198.10.0dof zinc finger protein DOF5.7
RefseqXP_022631652.10.0dof zinc finger protein DOF5.7
TrEMBLA0A1S3VP790.0A0A1S3VP79_VIGRR; dof zinc finger protein DOF5.7
STRINGXP_007158346.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.15e-58Dof family protein