PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g09130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25790.2 Da PI: 8.4598 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s Vradi11g09130.1 9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYAS 59 69***********************************************86 PP | |||||||
2 | K-box | 13.1 | 4.1e-06 | 79 | 109 | 8 | 37 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRh 37 + + ea+ + +++e++ L+++++ Lq+++R Vradi11g09130.1 79 QiNPEAEVKFWKREAEILRQQLQILQENHRT 109 2378999**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.992 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.78E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-33 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLLIFSS TGKLYEYAST 60 SMKSIIERYN ACKEEQHHQI NPEAEVKFWK REAEILRQQL QILQENHRTQ ANDGRTTLWS 120 ECQKPTRSRE STGNEPPRCP YEKGQEQILK DEIQELNRKG NLIFQENVEL YKKVYGTTDT 180 ATTSRNAFVP LPFGMHAGGP PQELVQLQLC QPEQEAYETS DTATK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-21 | 1 | 92 | 1 | 92 | MEF2C |
5f28_B | 3e-21 | 1 | 92 | 1 | 92 | MEF2C |
5f28_C | 3e-21 | 1 | 92 | 1 | 92 | MEF2C |
5f28_D | 3e-21 | 1 | 92 | 1 | 92 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g09130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521490.1 | 1e-132 | MADS-box transcription factor 23 isoform X2 | ||||
Swissprot | Q38840 | 8e-68 | AGL17_ARATH; Agamous-like MADS-box protein AGL17 | ||||
Swissprot | Q9SZJ6 | 8e-68 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A1S3VT58 | 1e-131 | A0A1S3VT58_VIGRR; MADS-box transcription factor 23 isoform X2 | ||||
STRING | GLYMA01G02525.1 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22630.1 | 7e-65 | AGAMOUS-like 17 |