PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g08900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 409aa MW: 44614.9 Da PI: 7.2385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 211 | 256 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI +L Vradi11g08900.1 211 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 256 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.0E-22 | 1 | 81 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.193 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-19 | 210 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.58E-15 | 210 | 261 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-19 | 211 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 211 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-16 | 213 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MTQSFVNGAG LPGQAFFNSN PVWVTGGDRL SASPCERARQ GQVFGLQTLV CIPSANGVVE 60 LGSTELIYQN PDLMNKVKVL FNFSNNNFDM GSSWPATSAD QGENDPSTLW LNDPEVRDSI 120 NTVAATPSVS NNNNNNGKRR SPNSRGSNDD GMLSFTSRAI LPATNLKSAG GGDSDHSDLE 180 ASVVKDPVVE PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM 240 DKASLLGDAI SYITELKSKL QTLESDKDGL QKQLEGVKKE LEKSSDNVNS NHMKHAGNSN 300 IKSANQALID LDIDVKIIGW DAMIRIQCSK KNHPAARLMA ALMELDLDVH HASVSVVNDL 360 MIQQATNKLG TIVTKSVGGV EIGARYSANY CSDPTTNFDN ENVFRHAW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_B | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_E | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_F | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_G | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_I | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_M | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
5gnj_N | 2e-34 | 205 | 281 | 2 | 78 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 200 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g08900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027345443.1 | 1e-174 | transcription factor MYC4-like isoform X3 | ||||
Swissprot | O49687 | 1e-141 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | A0A151QWJ5 | 1e-172 | A0A151QWJ5_CAJCA; Transcription factor MYC2 | ||||
STRING | Lus10030970 | 1e-157 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2938 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-124 | bHLH family protein |