PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g08600.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 792aa    MW: 87954.8 Da    PI: 5.8164
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g08600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2084139156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Vradi11g08600.1  84 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 139
                      688899***********************************************998 PP
2START1463.5e-462855092206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      la + ++elvk+ + +ep+W +ss    e +n +e  ++f+  ++       ++ea+r++ vv+m++++lv  +ld   +W e ++    +a+t
  Vradi11g08600.1 285 LAASSMAELVKMCQTNEPLWIRSSdgerEVLNFEEHARIFPCPQNlkhrseLRTEASRDTSVVIMNSVTLVDAFLDGQ-KWMELFPsivsRAKT 377
                      78899*******************7777777778888888777779***99***************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      ++ iss       g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vd+  ++  ++s+ +  ++ Sg++i++++ng+s+vtwv
  Vradi11g08600.1 378 VQIISSVasghasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDNFHQNF-HPSYPKYCRRSSGCVIQDMPNGYSRVTWV 470
                      ****998899************************************************999998.899999999******************** PP

                      E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      eh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Vradi11g08600.1 471 EHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 509
                      *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1975142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2177146IPR009057Homeodomain-like
PROSITE profilePS5007116.92581141IPR001356Homeobox domain
SMARTSM003898.8E-1982145IPR001356Homeobox domain
CDDcd000862.45E-1884142No hitNo description
PfamPF000467.2E-1884139IPR001356Homeobox domain
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PROSITE profilePS5084842.613275512IPR002913START domain
SuperFamilySSF559619.89E-32276511No hitNo description
CDDcd088752.93E-110279508No hitNo description
SMARTSM002343.5E-29284509IPR002913START domain
PfamPF018522.1E-38285509IPR002913START domain
SuperFamilySSF559613.57E-19527765No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNSD TLFSSSIQNS NFNFIPTMPF QPFPSMKEEE MMLRGKEEME  60
SGSGSEQVED KSGNEQESEQ PTKKKRYHRH TARQIQEMEA LFKECPHPDD KQRLKLSHEL  120
GLKPRQVKFW FQNRRTQMKA QQDRADNIIL RAENETLKSE NYRLQAALRN VMCPNCGGQC  180
IMGADLGLDE HQLRMENARL REELERVCCL TSRYTGRSLQ TMAAGPTLMA PSLDLDMNIY  240
PRHYSDPVAP CTEMIPVPML PPEASPFAEG GGILMEEEKS LALELAASSM AELVKMCQTN  300
EPLWIRSSDG EREVLNFEEH ARIFPCPQNL KHRSELRTEA SRDTSVVIMN SVTLVDAFLD  360
GQKWMELFPS IVSRAKTVQI ISSVASGHAS GTLQLMYAEF QVLSPLVSTR ETHFLRYCQQ  420
NAEEGTWAIV DFPVDNFHQN FHPSYPKYCR RSSGCVIQDM PNGYSRVTWV EHAKVEEKPV  480
HQIFSNYVYS GMAFGAQRWL GVLQRQCERV ASLMARNISD LGVIPSPEAR KNLMKLAQRM  540
IKTFGLNMST SGGQSWTAIS DSPEDTVRIT TRKVTEPGQP NGVILSAVST TWLPYSHTKV  600
FDLLRDERHR SQMDALSNGN SLNEVAHIAN GSHPGNCISL LRINVASNSS QNVELMLQES  660
CTDQSGSLVV YTTIDVDSIQ LAMSGEDPSC IALLPQGFMI VPMLSSPNVD TPINGNSSES  720
PSLNSGCLLT MGLQVLASTI PSAKLNLSSV TAINNHLCNT LHQIEAALSS SSENGTNFLC  780
TEPTVSGAPK Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g08600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521373.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1S3VSM00.0A0A1S3VSM0_VIGRR; homeobox-leucine zipper protein HDG5 isoform X2
STRINGXP_007158253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7