PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g06190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 186aa    MW: 20367.2 Da    PI: 7.0121
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g06190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++ fC  ++  lC+ C ++ H
  Vradi11g06190.1  4 LCDACESAAAIVFCAADEAALCHACDEKVH 33
                     7**************************998 PP
2zf-B_box30.95.8e-105291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Vradi11g06190.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                     5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
CDDcd000212.68E-6345No hitNo description
PfamPF006431.5E-5342IPR000315B-box-type zinc finger
SuperFamilySSF578459.16E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.2E-85290IPR000315B-box-type zinc finger
CDDcd000213.41E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCHACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPGSQPLE  120
PGESKRGQNQ LPKLKMGEKQ HNHVMPLLPT PGSDADGHTK METKMIDLNM KPNNRLHEQA  180
SNNQP*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g06190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954480.0BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA.
GenBankBT0987720.0BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521115.11e-137B-box zinc finger protein 18
SwissprotC0SVM52e-70BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S3VS401e-136A0A1S3VS40_VIGRR; B-box zinc finger protein 18
STRINGXP_007157945.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-72DBB family protein