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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi11g06010.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
SRS |
| Protein Properties |
Length: 316aa MW: 34437.7 Da PI: 6.4116 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi11g06010.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 225.3 | 1.2e-69 | 108 | 260 | 2 | 153 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssa 94
+sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrerqqql+a++++ ++s + + +r+r++ + +++s l++t+l+s+
Vradi11g06010.1 108 GSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSALQQNMETSGDLPRRQRERDHnNPTSSSPLACTRLPSN 201
57899*****************************************************99998888777777777763567777899******* PP
DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
s++ le ++P+ v+s+a frcvrvss+d++eee+aY tav+igGhvfkGiLyd+G+e
Vradi11g06010.1 202 PSSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPE 260
*********************************************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MAGLFSLGGR GNNNNNEEEI PPPPDTLYWY NNKNDDVSSY HRGGSFELWN QQQLQHQQQH 60
FMGQPPPQPR PLFHQDLYSA LGVGPSRPLS DDQSSSRSSF MVGGSGSGSG GISCQDCGNQ 120
AKKDCPHMRC RTCCKSRGFD CQTHVKSTWV PASRRRERQQ QLSALQQNME TSGDLPRRQR 180
ERDHNNPTSS SPLACTRLPS NPSSSGLEEV NFPAVVRSSA EFRCVRVSSI DEAEEEYAYS 240
TAVNIGGHVF KGILYDYGPE GNSNFLGGAG ESSSTGVGGL NLTTGAVVSE PLLDPSSLCD 300
VDYRRGNIAN QYSHL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G66350.1 | 1e-69 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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