PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g05270.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 629aa MW: 68108.8 Da PI: 6.9332

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g05270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	396	433	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Vradi11g05270.1 396 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 433 664559******************************88 PP
2	BELL	92.4	4.4e-30	273	327	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 Vd+rY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLkdai++q+ Vradi11g05270.1 273 PVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITSQL 327 69**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.2E-36	234	325	IPR006563	POX domain
Pfam	PF07526	9.2E-5	239	261	IPR006563	POX domain
Pfam	PF07526	4.4E-26	271	324	IPR006563	POX domain
PROSITE profile	PS50071	12.568	374	437	IPR001356	Homeobox domain
CDD	cd00086	9.66E-13	377	438	No hit	No description
SMART	SM00389	1.2E-9	377	441	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-17	378	444	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-29	380	443	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	394	433	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MLSEMFNFPP SAAAELMEQQ PVTATFRAAR QTGEWYGNRQ QQGVNMMMGG LGDSKNQNGV 60 NNNQHQAQHQ ISSINADSAA AMQLFLMNPQ TRSPSPPQSH ATPSSTLHML LPNPSSNSLQ 120 GFTGSAVGGS FGQFTWVPES AHQQGGVMEG QGLSLSLSSS LEAAKAEELR MGDSGFLYYN 180 HQQGGGVGAG ASSSSSTVQF PYKNNSHHQA LHLQGVIGHD NNQQGHVGFG SSSLGVVNVL 240 RNTKYVKAAQ ELLEEFCSVG REDYKGHASP LRPVDRRYNH YCEQMQMVVN SFDLMMGFGA 300 AVPYTALAQK AMSRHFRCLK DAITSQLKQS CELLGEKEGA GTSGLTKGET PRLKVLEQSL 360 RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR 420 NQVSNWFINA RVRLWKPMVE EMYQQELKEA ESTEERENNQ SNNSNISGNQ AQTPSTPGAA 480 TTSTATTAAP PTITTTKPTG KKSDINATES DSSLVAMNRQ GFSENQGKQS TTTSTTVMAS 540 VSATTSEIAP PGSQCFDSDL PPQRLMATDD TCRLVTADFG TASASADIGS TLIRFGTTVG 600 DVSLTLGLRH AGNMPEKTPF SVRDFGAI*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MLSEMFNFPP SAAAELMEQQ PVTATFRAAR QTGEWYGNRQ QQGVNMMMGG LGDSKNQNGV  60
NNNQHQAQHQ ISSINADSAA AMQLFLMNPQ TRSPSPPQSH ATPSSTLHML LPNPSSNSLQ  120
GFTGSAVGGS FGQFTWVPES AHQQGGVMEG QGLSLSLSSS LEAAKAEELR MGDSGFLYYN  180
HQQGGGVGAG ASSSSSTVQF PYKNNSHHQA LHLQGVIGHD NNQQGHVGFG SSSLGVVNVL  240
RNTKYVKAAQ ELLEEFCSVG REDYKGHASP LRPVDRRYNH YCEQMQMVVN SFDLMMGFGA  300
AVPYTALAQK AMSRHFRCLK DAITSQLKQS CELLGEKEGA GTSGLTKGET PRLKVLEQSL  360
RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR  420
NQVSNWFINA RVRLWKPMVE EMYQQELKEA ESTEERENNQ SNNSNISGNQ AQTPSTPGAA  480
TTSTATTAAP PTITTTKPTG KKSDINATES DSSLVAMNRQ GFSENQGKQS TTTSTTVMAS  540
VSATTSEIAP PGSQCFDSDL PPQRLMATDD TCRLVTADFG TASASADIGS TLIRFGTTVG  600
DVSLTLGLRH AGNMPEKTPF SVRDFGAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	383	441	5	63	Homeobox protein Meis2
3k2a_B	1e-16	383	441	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g05270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520892.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-138	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S3VRS9	0.0	A0A1S3VRS9_VIGRR; BEL1-like homeodomain protein 4
STRING	XP_007156875.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-120	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]