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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g04580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 168aa MW: 18035.6 Da PI: 10.1938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vradi11g04580.1 26 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 75 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 26 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.48E-25 | 26 | 85 | No hit | No description |
PROSITE profile | PS51032 | 22.313 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-11 | 26 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-30 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDPQGGEREP TRKRSGVAVA VEGERRYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSTPV 60 AAARAYDTAV FYLRGPSARL NFPDLLVGEG AALVAGCDMS AASIRKKATE VGARVDALQA 120 SLHHHHVAPP PPELLSRGDG GGMEWATAKG KRCGHCSVLT TMDDGVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 25 | 83 | 4 | 63 | ATERF1 |
3gcc_A | 2e-14 | 25 | 83 | 4 | 63 | ATERF1 |
5wx9_A | 3e-14 | 26 | 83 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g04580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519983.1 | 9e-99 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 5e-49 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1S3VNM0 | 2e-97 | A0A1S3VNM0_VIGRR; ethylene-responsive transcription factor ERF011-like | ||||
STRING | XP_007156777.1 | 8e-81 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 2e-51 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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