PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 168aa    MW: 18035.6 Da    PI: 10.1938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-172675255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Vradi11g04580.1 26 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 75
                     7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-372689IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-212684IPR016177DNA-binding domain
CDDcd000181.48E-252685No hitNo description
PROSITE profilePS5103222.3132683IPR001471AP2/ERF domain
PfamPF008474.9E-112675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-302684IPR001471AP2/ERF domain
PRINTSPR003672.5E-112738IPR001471AP2/ERF domain
PRINTSPR003672.5E-116585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDPQGGEREP TRKRSGVAVA VEGERRYKGI RMRKWGKWVA EIREPNKRSR IWLGSYSTPV  60
AAARAYDTAV FYLRGPSARL NFPDLLVGEG AALVAGCDMS AASIRKKATE VGARVDALQA  120
SLHHHHVAPP PPELLSRGDG GGMEWATAKG KRCGHCSVLT TMDDGVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142583463ATERF1
3gcc_A2e-142583463ATERF1
5wx9_A3e-1426831472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g04580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519983.19e-99ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH945e-49ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1S3VNM02e-97A0A1S3VNM0_VIGRR; ethylene-responsive transcription factor ERF011-like
STRINGXP_007156777.18e-81(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-51DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]