PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 175aa    MW: 20395.1 Da    PI: 10.87
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-1075134564
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                      ++ rr+++NR +ArrsR RK+  +e+L++ +  +  eN++L +  + l  ++ +l++e+e
  Vradi11g03900.1  75 RKRRRMISNRDSARRSRMRKQRHLENLRNQMNLFRVENRELNNGFQFLLHHCNRLRTENE 134
                      6789************************************************99999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-1171135IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.02573136IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.39E-1075127No hitNo description
PfamPF001702.4E-875134IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-875147No hitNo description
CDDcd147028.71E-1676127No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLSHLTSSDS MLGNAFPAFD YALTPWDGPD FLPFNPTSPN PVTSSSASDD PKTTPAHQKP  60
PSDQSNRVVS LMEERKRRRM ISNRDSARRS RMRKQRHLEN LRNQMNLFRV ENRELNNGFQ  120
FLLHHCNRLR TENEWLRSER TMLRQKLADI NQILLFRQLQ PFSTAWPCNI VMAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478RKRRR
28794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520495.11e-126bZIP transcription factor 53-like
TrEMBLA0A1S3VQC91e-125A0A1S3VQC9_VIGRR; bZIP transcription factor 53-like
STRINGXP_007156692.12e-95(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-28basic leucine-zipper 5