PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 368aa    MW: 41109.3 Da    PI: 6.9508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08165242355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC............................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas.........................kapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ ++f  L  +lP +                                ++Ka++L  A++Y+k+L+
  Vradi11g03750.1 165 QEHVIAERKRREKLSQRFIALSAVLPGLKkgyaitnlrfseqtlsdhlayyvnsTLMLDPMDKASVLGDAIKYVKQLR 242
                      6799***********************888***********************9888889****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.027162241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-12164192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6165241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-13166254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-7167246No hitNo description
SMARTSM003532.3E-9168247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-12223254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMEIASTNYL PELEMEYPTF LDQYQMDSFA CPLNDFDFES FSGSPESNSS YQLNSETILN  60
CFPAQSPDRS FTPPRPTKRL KNTFNTFKTC AGDSISHNVS ASPSSQLISF GHNFHLKPKS  120
ENPSSENMDF TDFVSQGSYQ DKTFFSSDNR TNQVGLTTRN PIQAQEHVIA ERKRREKLSQ  180
RFIALSAVLP GLKKGYAITN LRFSEQTLSD HLAYYVNSTL MLDPMDKASV LGDAIKYVKQ  240
LRERVQNLEE KTAKITTGSS VLVKRSILFA DGENSDSHCA NSLPEIEVRV SGKDVLIRTQ  300
SDKHSGRAAV ILSELEKLHF IVQSSSLLPF GNNNIDVTII AQMKENYMAA KDLLGRLRKA  360
LKQVDGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-175AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520389.10.0transcription factor bHLH18
RefseqXP_022631367.10.0transcription factor bHLH18
TrEMBLA0A1S3VQP70.0A0A1S3VQP7_VIGRR; transcription factor bHLH18
STRINGXP_007156673.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-45bHLH family protein