PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 541aa    MW: 60643.2 Da    PI: 6.1245
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.51.2e-27315369156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++Wt+eLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Vradi11g03530.1 315 KMKVDWTSELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMH 369
                      5689*****************.********************************96 PP
2Response_reg32.83.6e-12201261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+ d +++ +  + + le  +y +v ++ d  eal  +  +   +++ ++ ++ +  + G+++l++    +++lp i+++ ++  +++ +++ 
  Vradi11g03530.1  20 VLVLDGDRSSAAEIGEQLEAMDY-HVSTFYDENEALSAVSSSPegFHVAIVEVSTSSsLGGFKFLEN----AKDLPTIMISKNQCLNTTMKCIA 108
                      78999999999************.***************888888*******999998899988864....34799****************** PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +flsKp ++++l +
  Vradi11g03530.1 109 LGAVEFLSKPLSEDKLKN 126
                      **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-1616139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-1816153No hitNo description
SMARTSM004486.6E-518128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.46319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.13E-921131No hitNo description
PROSITE profilePS5129414.379312371IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-27313372IPR009057Homeodomain-like
SuperFamilySSF466898.96E-18314371IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25315370IPR006447Myb domain, plants
PfamPF002498.4E-7318367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LVLDGDRSSA AEIGEQLEAM DYHVSTFYDE NEALSAVSSS  60
PEGFHVAIVE VSTSSSLGGF KFLENAKDLP TIMISKNQCL NTTMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHRAFNSRA NGLSESLKPV KESVESVLQL QTGNEQDKTH KRTMSIDLEN  180
VSRFGDNDNE QSVCDKYPAP STPQLKHGTR LLDDGDCHEQ TNFSIEKESG EHDGECKSVE  240
TSCENLNAES TPQPTEPEET PIKEEEDFAD GSKGERAVSL NLQNEKFLSN ADGHTSPKKM  300
GVLNDSCEIK ANRKKMKVDW TSELHKKFVK AVEQLGIDQA IPSRILEIMK VEGLTRHNVA  360
SHLQKYRMHK RQSAPGEEDR KWHNQRDAMQ RNFYLQRPIM AYPPYHSNQT ISPAPIYPMW  420
GQPGSQTAAV QIWGPPAYPL WHPTESWNWK PYPGMHVDAW GCPLFPPPQA PGFPFNQNIP  480
GLHTPKPMDY RFSMPRSSFE HHPVATTVVD MTGSLVIQHH DAAQMDYALI LFIPLAKTQN  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15313368358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520921.10.0two-component response regulator-like APRR2 isoform X2
RefseqXP_022643257.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-127APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1S3VRV60.0A0A1S3VRV6_VIGRR; two-component response regulator-like APRR2 isoform X2
STRINGXP_007156636.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-125ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]