PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g02000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 329aa    MW: 37094.5 Da    PI: 6.371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g02000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  Vradi11g02000.1 22 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 69
                     788*******************************************97 PP
2Myb_DNA-binding53.27e-1775119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Vradi11g02000.1  75 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 119
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4011769IPR017930Myb domain
SuperFamilySSF466895.62E-3020116IPR009057Homeodomain-like
SMARTSM007171.9E-122171IPR001005SANT/Myb domain
PfamPF002492.5E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-252376IPR009057Homeodomain-like
CDDcd001676.17E-112569No hitNo description
PROSITE profilePS5129425.71270124IPR017930Myb domain
SMARTSM007171.9E-1674122IPR001005SANT/Myb domain
PfamPF002491.6E-1575119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2577124IPR009057Homeodomain-like
CDDcd001672.14E-1177120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKQPAIFFLS FSSSASNKKV KRGLWSPEED EKLIRYITTH GYGCWSEVPE KAGLQRCGKS  60
CRLRWINYLR PDIRRGRFTP EEEKLIISLH GVVGNRWAHI ASHLPGRTDN EIKNYWNSWI  120
KKKIRKPSVN SSITTTQSVD HHPQFNYNSN QLDHFGNQDN VTTKAAVQET IFSSTCPLFM  180
FDTSSLDHGT TTVDTTKLFQ DSLGLSSETW NLSQHQVHHG IPPQAAPAAA TFTAATVIDT  240
TNYLPPLIEN VENMVPNMEV QGCSIEEEGE MALECLRRQE LNEWVENQQH CPSFLFWDSV  300
ERQLGGEELA PNTSNIGTNT LSPFPSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26221247108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g02000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631357.10.0uncharacterized protein LOC106776596
TrEMBLA0A3Q0EMB20.0A0A3Q0EMB2_VIGRR; uncharacterized protein LOC106776596
STRINGXP_007158529.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-92myb domain protein 103