PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 348aa    MW: 39511.2 Da    PI: 6.6698
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27119179259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++ ++++prsYYrCt++   gC ++k+v+rs+edp+v++i Y+g+H ++
  Vradi11g01720.1 119 QDDYSWRKYGQKNILNAKYPRSYYRCTFQkskGCFATKQVQRSEEDPNVFDISYRGNHVCS 179
                      8**************************998899*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26111180IPR003657WRKY domain
PROSITE profilePS5081121.62113176IPR003657WRKY domain
SuperFamilySSF1182901.15E-23117180IPR003657WRKY domain
SMARTSM007741.9E-35118180IPR003657WRKY domain
PfamPF031063.8E-24119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MESEKSWVQK ALVSELIQGL EIARKLKEDF NIPSSIHTRD SLLQSILSSY NKALLILRPN  60
APFSNSETMH QPTQTSSPHE GALKDHQELK QNAKKRKKMP KWKEQVRVKI HNGVEEPLQD  120
DYSWRKYGQK NILNAKYPRS YYRCTFQKSK GCFATKQVQR SEEDPNVFDI SYRGNHVCSQ  180
GKDVVLSLKL ADTEEKSQGC DSDIQFHHAQ SSRERVTNYT NTLIAETDNM TQHPFPSFEC  240
MTHDNHHTFL PSFVLENDPF CSTISQTSFF SPNSPESNYL VSPSFHLHDE FDRVFDKPCP  300
DSDAVGIVLA DAPTTNSPIF DFNFSLDTAG IGGDCPSMPW GFHPKCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-171201761874Disease resistance protein RRS1
5w3x_D4e-171201761874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896LKQNAKKRK
29397KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520499.10.0probable WRKY transcription factor 53
TrEMBLA0A1S3VR070.0A0A1S3VR07_VIGRR; probable WRKY transcription factor 53
STRINGXP_007158568.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2851133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-47WRKY family protein