PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 349aa    MW: 38775.2 Da    PI: 6.0165
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-27120202271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Vradi11g01060.1 120 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngastpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 202
                      689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-46115208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-35119202IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.0E-25121202IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-21122203IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011383.3E-50209346IPR014889Transcription factor DP, C-terminal
CDDcd144581.24E-29211287IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-31214300No hitNo description
PfamPF087818.3E-31214300IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDRFTEPDRS SLTLRDTAER LWPWGKQLTN MGTQPRQTFR EEEEEELPCR GTISGQSMST  60
SRSVGSPSSR SEQTMATPAS DNTFLRLNNL DIHGDDAGSQ GAVASKKKKR GQRTVGGDKS  120
GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFADPSNG ASTPDQQQYD EKNIRRRVYD  180
ALNVLMAMDI ISKDKKEIQW KGLPRTSLSD IEDLKYIGLQ KLIERNEQLY SSGNAPNGGV  240
SLPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKFC ERSQNDNKPD  300
NPPDGGEGSS MSSLYHAQIP SSVSNPPARP PSSPPLPGIL KARVKNEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-38113207193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937950.0BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520707.10.0transcription factor-like protein DPB isoform X1
RefseqXP_017407953.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_017407954.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-140DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0L9TB720.0A0A0L9TB72_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T6460.0A0A0S3T646_PHAAN; Uncharacterized protein
TrEMBLA0A1S3VR860.0A0A1S3VR86_VIGRR; transcription factor-like protein DPB isoform X1
STRINGXP_007157060.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP