PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g13250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 638aa    MW: 72924 Da    PI: 9.2394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g13250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08458499240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE +ll ++ +++++g   +W+ I++++g+gR+ +++
  Vradi10g13250.1 458 KPWSKEEIDLLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 499
                      69************************************9987 PP
2Myb_DNA-binding27.57.5e-09580624345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
  Vradi10g13250.1 580 VWSAVQERALVQALKAFPKEtsqRWERVATAVP-GKTVNQCKKKFA 624
                      6********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.4E-2091196IPR001623DnaJ domain
SuperFamilySSF465652.88E-1993201IPR001623DnaJ domain
SMARTSM002713.2E-1394169IPR001623DnaJ domain
PfamPF002264.5E-1795174IPR001623DnaJ domain
PROSITE profilePS5007617.99995177IPR001623DnaJ domain
CDDcd062577.03E-1295166IPR001623DnaJ domain
PRINTSPR006259.2E-8100118IPR001623DnaJ domain
PRINTSPR006259.2E-8118133IPR001623DnaJ domain
PRINTSPR006259.2E-8149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.3E-5452500IPR009057Homeodomain-like
PROSITE profilePS500906.69452507IPR017877Myb-like domain
SuperFamilySSF466897.48E-8453501IPR009057Homeodomain-like
SMARTSM007171.8E-7456509IPR001005SANT/Myb domain
PfamPF002492.9E-7458499IPR001005SANT/Myb domain
CDDcd001672.73E-5459501No hitNo description
PROSITE profilePS512939.859576631IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.7E-5577624IPR009057Homeodomain-like
SMARTSM007174.9E-9577629IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-9579634IPR009057Homeodomain-like
PfamPF002493.3E-7580626IPR001005SANT/Myb domain
CDDcd001674.02E-6581627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MAVHTKFRLI TYSQEIVDGQ PIFVSSNSLP TKALKYEPAG HSFHSAALKL RGVQEDKNEA  60
DDKKVPDDKE QTSLPSDSYS SKSKKKSGTG DKQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPTLGDDNT PLKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRILRRKEE  300
EKAEKQRKKE AKYLAKKLQE EEAARIAEQE KQRKEEEERQ AAEAALQQKK VKEKEKKLLR  360
KERARLRTLS GPIISQRLLD ISDDDVEGLC MSLDIEQMRS LCENMEGKQV LSEQASVLRD  420
AMSSKKEVAD VKTNKQDANG SIKANGSASR SNVEKKEKPW SKEEIDLLRK GMQKYPKGTS  480
RRWEVISEYI GTGRSVEEIM KATKTVLLQK PDSSKAFDTF LEKRKPGAQS IESPLSTREE  540
LEGVSTLAST NSTEESHSKS TDNQNTASAN GVSSSSEQDV WSAVQERALV QALKAFPKET  600
SQRWERVATA VPGKTVNQCK KKFAMMKENF RNKKSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-2019129420123Zuotin
5dje_B2e-2019129420123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g13250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518874.10.0dnaJ homolog subfamily C member 2
RefseqXP_014518875.10.0dnaJ homolog subfamily C member 2
RefseqXP_014518876.10.0dnaJ homolog subfamily C member 2
RefseqXP_014518877.10.0dnaJ homolog subfamily C member 2
RefseqXP_014518878.10.0dnaJ homolog subfamily C member 2
RefseqXP_014518880.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A1S3VKS50.0A0A1S3VKS5_VIGRR; dnaJ homolog subfamily C member 2
STRINGXP_007148540.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain