PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g13190.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 676aa    MW: 77272.9 Da    PI: 7.7077
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g13190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.14.4e-2163156190
             FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      +fY+e+Ak+ GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnHel 
  Vradi10g13190.1  63 EFYSEFAKRSGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgAPEWRVTGFANHHNHELL 156
                      6**************9998877356667999*************99999999*******************9988888**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1863156IPR004330FAR1 DNA binding domain
PfamPF105516.5E-21279370IPR018289MULE transposase domain
PROSITE profilePS509669.186554590IPR007527Zinc finger, SWIM-type
PfamPF044345.5E-6561588IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MMSEDAGSML VVYDDPSDQR SLSLDDASST EESPDETRLS LETTHDAIPY IGQRFATHDA  60
AYEFYSEFAK RSGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTST ESKPQRNRKS  120
SRCGCQAYMR ISKTTEFGAP EWRVTGFANH HNHELLEPNQ VRFLPAYRTI SDVDKNRILM  180
FAKTGISVHQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEEESL DLLRMCRNIK  240
EKDPNFKFDY TLDANNRLEN IAWSYASSIQ WYDIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CTLLRDETVR SFSWALKAFL GFMNGKAPQT ILTDQNICLK EALSTEMPTT  360
KHAFCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES VEDFDLGWRE MVCSFGLHSN  420
RHMVNLYSSR SLWALPFLRS HFLAGMTSTG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQTGEQQ TMQQNLQNVC LKTGAPMESH AATILTPFAF SKLQEQLVLA AHYASFPIED  540
GFLVRHHTKA EGGRKVYWAP QEGIISCSCH QFEFTGILCR HSLRVLSTGN CFQIPDGYLP  600
IRWRRISMPS SKLLQSAPND HAERVKLLQN MVSSLMTESA KSKERLDIAT EHVSILLSRL  660
REQPISLQGG RESQN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g13190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518871.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1S3VKI60.0A0A1S3VKI6_VIGRR; protein FAR1-RELATED SEQUENCE 11
STRINGXP_007148586.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]