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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi10g12650.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 190aa MW: 21962.5 Da PI: 5.1062 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi10g12650.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 122.3 | 4.4e-38 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
lppGfrF Ptdeel+v++L++k++ +++ +vi+++++y+++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg +++v+s
Vradi10g12650.1 8 LPPGFRFYPTDEELIVHFLHRKASLLPCHP-DVIPDLELYQYDPWELHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVS 92
79*************************999.99**************977778899******984........58*****************99 PP
NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++ vg+kk +vf+ g++ ++ kt+W+m+eyrl
Vradi10g12650.1 93 SsNSKRVGMKKYFVFHVGEDATAIKTNWIMQEYRL 127
878889***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010089 | Biological Process | xylem development |
GO:0043067 | Biological Process | regulation of programmed cell death |
GO:0048367 | Biological Process | shoot system development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 190 aa
Download sequence Send
to blast |
MADTNVNLPP GFRFYPTDEE LIVHFLHRKA SLLPCHPDVI PDLELYQYDP WELHGRALAE 60 GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSSSNSKRVG MKKYFVFHVG EDATAIKTNW 120 IMQEYRLSDS ASSTRSSKRK PQPKSDYNKW VICRVYERNG EEDNGTELSC LDEVFLSLDD 180 DLDEISLPN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-41 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-41 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-41 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-41 | 4 | 159 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-41 | 4 | 159 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-41 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-41 | 4 | 159 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 1e-137 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |