PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g12060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31594.2 Da    PI: 9.0941
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g12060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
  Vradi10g12060.1 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
                     8***********************************************86 PP
2K-box79.67.5e-2781172999
            K-box   9 leeakaeslqqelakLkkeienLqreq.RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + +++++ +q+e+a L+++++ Lq+ + R+l+Ge+L+ L +keLq+Le+qLe slk +R kK+++l+++i+el++k + +++en +L +k++
  Vradi10g12060.1  81 NPASEEKFWQTEAASLRQQLQYLQECHsRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQENVELYQKMD 172
                      5678899*****************6544*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002654.06E-44277No hitNo description
SuperFamilySSF554559.16E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.6E-2483171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.90586177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST  60
SMKSVFERYN KLKEEHHHLM NPASEEKFWQ TEAASLRQQL QYLQECHSRQ LMGEELTGLG  120
IKELQNLENQ LEMSLKGVRM KKDQILTSEI KELRQKGNLI HQENVELYQK MDQIQKENAE  180
LQKKVYGSRS TGEENVASSP SYMVRNEYDL RPPISLQLSQ PQTHYSEPSA KVMKLGYSLK  240
LIINQIAAAL AKNCSVNGEL SFCDKKQLCY NFCLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22181181MEF2C
5f28_B3e-22181181MEF2C
5f28_C3e-22181181MEF2C
5f28_D3e-22181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g12060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968100.0BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518486.11e-179MADS-box transcription factor 23-like isoform X1
RefseqXP_022642753.11e-179MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP499e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3VJF21e-177A0A1S3VJF2_VIGRR; MADS-box transcription factor 23-like isoform X1
STRINGGLYMA13G32810.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.19e-94AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]