PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g11120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 280aa    MW: 31169.8 Da    PI: 8.144
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g11120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.16.2e-3642101261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +++ lkcprCds ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++++
  Vradi10g11120.1  42 PSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 101
                      67899************************************************8777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-224399IPR003851Zinc finger, Dof-type
PfamPF027011.0E-314599IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.37246100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104884IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGLSSKQVSN RGLDWDQTLL QAQNLELPKP TPMRKQQQQT QPSEPLKCPR CDSINTKFCY  60
YNNYNKSQPR HFCRACKRHW TKGGTLRNVP VGGGRKNKRA KKSTTTSNGS MDDELRTPVT  120
IPPLAVDDHK TTPSSLYESL CLPQQNPTST KVSQGKDFGI GNGIFLSSTV PFPQNQSLLF  180
PFTTSNSFDT NTCAVSNSLQ SSSVYNYGDE FKILEEPTVN STMACTSGGS RTQPWEIAAT  240
SSGLEMSNYW SWEDIDSVWH LGPLHFQGFF YDCIATDHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g11120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517144.10.0dof zinc finger protein DOF3.2
TrEMBLA0A1S3VGA20.0A0A1S3VGA2_VIGRR; dof zinc finger protein DOF3.2
STRINGXP_007148198.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-30TARGET OF MONOPTEROS 6