PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g10070.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 367aa    MW: 41367 Da    PI: 9.0514
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g10070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.4e-2788138255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH++Fv++ve+LGG   AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Vradi10g10070.1  88 PRLRWTPELHHSFVHVVERLGG---ATPKLVLQLMNVQGLSIAHVKSHLQMYRS 138
                      8*******************99...89**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.40484141IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2784139IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1386139IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-2088140IPR006447Myb domain, plants
PfamPF002491.5E-989137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSEGHEIHNN EESSSGCSQK CSSFDLNAEA CSDDNTNGTT GDGYELTTNE NNIEKVNDEG  60
TSANGSSISR EGNARRGTVR QYVRSKMPRL RWTPELHHSF VHVVERLGGA TPKLVLQLMN  120
VQGLSIAHVK SHLQMYRSKK LDEAGQVLSQ TYRWNQNQKL RRSVILHESM SPQQHLKMGN  180
GGIILATQFN KHCHFPSLMD TPFPLSSSHT NDTDSRQQQW YINHQSFRKS IASGHIQAKD  240
TTTRPSKLLE EKSWIPLEIK SNHQSKFQKL AANVAPKNNG SQAVQLAEWS FVNKTSVREY  300
LSNKSNEPRN YSNNLKLDFD PPFRIKKDEQ EVPNLQLGLS YTVASDGGKM DHYRENQEIS  360
TKLSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-1589140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1589140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1589140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1589140357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-1589140458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g10070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-163AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517457.10.0uncharacterized protein LOC106774946
TrEMBLA0A1S3VGW90.0A0A1S3VGW9_VIGRR; uncharacterized protein LOC106774946
STRINGXP_007148039.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-31G2-like family protein