PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g09900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 356aa    MW: 38247.5 Da    PI: 5.203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g09900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182171256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Vradi10g09900.1 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 71
                     689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103220.4952178IPR001471AP2/ERF domain
CDDcd000185.28E-312178No hitNo description
Gene3DG3DSA:3.30.730.107.1E-292178IPR001471AP2/ERF domain
PfamPF008471.8E-122170IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202278IPR016177DNA-binding domain
PRINTSPR003671.2E-72233IPR001471AP2/ERF domain
PRINTSPR003671.2E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGAVSDANRT RKKSSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA  60
YDNAARALRG ANARTNFELP EATSGDASKR GDGGGSTFVP NCSEPFSFED VNEPGEDAEG  120
LLGALKAKLL DGKKGKFHFP FLPNSAASPL VQSGWVSTST QNVCSAEKDL LLPSSSARNT  180
VLSSMNGTGA NPLLGVTSTL ATSNTCSKSM VIPNHDHEGS EGRSSRVDSH QLCQTPTEAA  240
WFNEVAYELP WPTQFMSQVP DNNNNLLASA ATLAWPLSGV IESTIDMACP DQGTSSCNKS  300
GQMMNMVSMQ LPLVGGATEG LWTLEQQQFV QCENNSWFSY NGSWDPLLYM PSELA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g09900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517456.10.0ethylene-responsive transcription factor ERF119-like
TrEMBLA0A1S3VGG90.0A0A1S3VGG9_VIGRR; ethylene-responsive transcription factor ERF119-like
STRINGXP_007148016.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-14related to AP2 11