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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g09690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26402.2 Da PI: 9.7499 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.4 | 1.4e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Vradi10g09690.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 82.6 | 8.9e-28 | 114 | 180 | 34 | 100 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e+ +++Ge+L+s++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e Vradi10g09690.1 114 EKMQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 180 5689************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-33 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.34E-46 | 17 | 91 | No hit | No description |
PRINTS | PR00404 | 4.0E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.532 | 94 | 184 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-20 | 114 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAFPNPSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSVKET IERYKKACSD SSAGSASEAN AQVLLVPCYV FLSEKMQMMG 120 ESLGSMTTKD LKNLESKLEK GISRIRSKKN ELLFAEIEYM QKREIDLHNN NQLLRAKIAE 180 SERSHNMGVL PGGTSYDSMQ SQQPFDSRGY FQVTGLQPNS QYARQDQMSL QLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-22 | 16 | 104 | 1 | 85 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g09690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY382833 | 1e-142 | AY382833.1 Glycine max MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517920.1 | 1e-158 | floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_017434001.1 | 1e-158 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_017434002.1 | 1e-158 | PREDICTED: floral homeotic protein AGAMOUS isoform X2 | ||||
Refseq | XP_017434003.1 | 1e-158 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_022642888.1 | 1e-158 | floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_022642889.1 | 1e-158 | floral homeotic protein AGAMOUS isoform X1 | ||||
Swissprot | Q40885 | 1e-115 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0S3S373 | 1e-156 | A0A0S3S373_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VI10 | 1e-156 | A0A1S3VI10_VIGRR; floral homeotic protein AGAMOUS isoform X1 | ||||
STRING | XP_007147970.1 | 1e-141 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-107 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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