PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g08310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YC | ||||||||
Protein Properties | Length: 606aa MW: 67881.5 Da PI: 7.0631 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 138.9 | 1.3e-43 | 62 | 161 | 2 | 97 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 +ksfw++q ie++td++ +h lPl+r+kki+k+dedvk +saeaPv+++kacelfi+elt+++w ++e n+rrt+kksdia+a++rtd+fdf Vradi10g08310.1 62 VKSFWAQQlkeIEESTDLRnQHMLPLSRVKKIMKSDEDVKLVSAEAPVVFAKACELFIMELTMKAWANTEANNRRTIKKSDIASAIARTDVFDF 155 799***9998899*****967889********************************************************************** PP NF-YC 92 lvdivp 97 l di p Vradi10g08310.1 156 LEDIAP 161 ***987 PP | |||||||
2 | NF-YC | 111.4 | 5.1e-35 | 268 | 356 | 2 | 87 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 +k+fwe+q i++++d+k ++lPl+rikki+k+dedvkm+s+ea +ll kacelfi+elt+rsw h e+ kr+ +kk+d+a+a++ d Vradi10g08310.1 268 VKTFWERQmkeIKESSDLKSNSLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIKKTDVASAISMND 356 699***9965567789*********************************************************************9776 PP | |||||||
3 | NF-YC | 152.1 | 1.1e-47 | 417 | 520 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql +fw+kq +e++++ +nh lPlarikki+k+dedv+m+saeaPvll+kace+fi+elt+r+w + eenkrrtl k+diaaa+++td++df Vradi10g08310.1 417 QLSKFWAKQhqeVEETSESRNHCLPLARIKKIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWANVEENKRRTLSKNDIAAAMSKTDMYDF 510 7999***9988899999***************************************************************************** PP NF-YC 92 lvdivprdel 101 lvdivpr+e+ Vradi10g08310.1 511 LVDIVPREET 520 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.95E-29 | 20 | 156 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.9E-33 | 85 | 161 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-20 | 85 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.02E-24 | 259 | 357 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.9E-28 | 280 | 353 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-18 | 289 | 352 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.18E-29 | 418 | 511 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.4E-36 | 440 | 517 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-21 | 440 | 502 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 606 aa Download sequence Send to blast |
MEQNQHGQPG RGIGSAPAQE AHSKNQYQSK PTNIQTVASS YPGEHHYALR YQQRQDQLEE 60 KVKSFWAQQL KEIEESTDLR NQHMLPLSRV KKIMKSDEDV KLVSAEAPVV FAKACELFIM 120 ELTMKAWANT EANNRRTIKK SDIASAIART DVFDFLEDIA PIPRNHKNTM MHPLLPGNAP 180 TPTQNVPYMP PPQHVAAKIP QALQTYPLAP RAKMDQNQQG EAGKRIGADG GKKLTAGVVP 240 VASPYAGGYR YDRQCIYQRQ QEKLQQRVKT FWERQMKEIK ESSDLKSNSL PLSRIKKIMK 300 FDEDVKMVSS EATMLLGKAC ELFIMELTMR SWAHVEDDKR KIIKKTDVAS AISMNDIPLH 360 KNMDEKKHDQ AAKEGCDKSK VQSDPKMDPP TSPLALTIGP SASSSNPQPP KEPLEQQLSK 420 FWAKQHQEVE ETSESRNHCL PLARIKKIMK SDEDVRMVSA EAPVLLAKAC EMFIMELTMR 480 AWANVEENKR RTLSKNDIAA AMSKTDMYDF LVDIVPREET RGPQVFAGIP GTPIPPTLSQ 540 ILPNCPVPPH NQHDAAGQQS GAPTMLMGMP LLDPTDPEQL QDRPSPTPML PIPEEEDNPS 600 PDSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-44 | 69 | 517 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | RRTIKKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g08310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017414263.1 | 1e-152 | PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Swissprot | Q8L4B2 | 6e-49 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q9SMP0 | 8e-49 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A0L9TTQ1 | 1e-151 | A0A0L9TTQ1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147755.1 | 1e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-51 | nuclear factor Y, subunit C9 |