PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi10g08030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 218aa MW: 24328.5 Da PI: 8.9288 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 5.2e-34 | 2 | 55 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Vradi10g08030.1 2 PRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQIMNVKGLTIAHVKSHLQMYRS 55 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-32 | 1 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.562 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-16 | 2 | 57 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-25 | 2 | 56 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-9 | 3 | 54 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MPRLRWTPDL HRCFVHAVQR LGGEDRATPK LVLQIMNVKG LTIAHVKSHL QMYRSMKQEQ 60 KSEGTKKKAV APEFLASTFS TLGSRYTQQN PHQRTCTEQL LPTHAQRNDC ESGKHGGKSI 120 NEEKMKSYII FEGLLSDQTV QENKIGPEKV SLWGDTGYQS DRERFHDRIA AAIGGGEIMC 180 ETTLSLSMTS RATSHSFFNR SHSGPDANDV SLELTLA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-20 | 3 | 57 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 3 | 57 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 3 | 57 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 3 | 57 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 3 | 57 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi10g08030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 2e-68 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014517413.1 | 1e-164 | protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A1S3VGD0 | 1e-163 | A0A1S3VGD0_VIGRR; protein PHR1-LIKE 1-like | ||||
STRING | XP_007147718.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-30 | G2-like family protein |