PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g07810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 238aa MW: 27114.8 Da PI: 5.0508 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 163 | 199 | 19 | 55 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ Vradi10g07810.1 163 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 199 45679*****************************885 PP | |||||||
2 | ELK | 41.9 | 2.1e-14 | 119 | 140 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Vradi10g07810.1 119 ELKGQLLRKYSGYLGSLKQEFM 140 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 3.3E-20 | 35 | 86 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.8E-19 | 38 | 79 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.174 | 119 | 139 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 119 | 140 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.5E-11 | 119 | 140 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.086 | 139 | 202 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 141 | 206 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-20 | 141 | 217 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 144 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.22E-13 | 151 | 203 | No hit | No description |
Pfam | PF05920 | 3.5E-17 | 159 | 198 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 177 | 200 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVFTRSLQVG APPEVVARLE EACASTVTMT GDAAGSSCIG EDPALDQFME AYCEMLTKYE 60 QELSKPLKEA MLFLQRVECE NLDIAPSVSC NEGGGDRNGS SEEDVDLQSM IDPQAEDREL 120 KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK EARQQLLEWW SRHYKWPYPS ESQKLALAES 180 TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDPSHPHYYV DTVMANPFPM DLSHPML* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 143 | LKQEFMKKRK |
2 | 140 | 144 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g07810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | SOYHOMEOGE | 0.0 | L13663.1 Glycine max homeobox-containing (Sbh1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014518717.1 | 1e-154 | homeobox protein SBH1 isoform X3 | ||||
Refseq | XP_014518718.1 | 1e-154 | homeobox protein SBH1 isoform X3 | ||||
Swissprot | P46608 | 1e-142 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A1S3VK22 | 1e-153 | A0A1S3VK22_VIGRR; homeobox protein SBH1 isoform X3 | ||||
STRING | XP_007147684.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-113 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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