PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g06090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 434aa    MW: 47228 Da    PI: 6.0945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g06090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31256314259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Vradi10g06090.1 256 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 314
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-31250316IPR003657WRKY domain
PROSITE profilePS5081132.925250316IPR003657WRKY domain
SuperFamilySSF1182903.01E-26253316IPR003657WRKY domain
SMARTSM007741.4E-37255315IPR003657WRKY domain
PfamPF031069.0E-26257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
YGGGGGGSSS CSTGTSSAEL PTTSHHHTIT HTLSRNDHWH QHFSSSSSSS DPITFSSVLQ  60
DPRGLTNFGD PFSTMRDPFL QELDMPSASS YFTGGLEEAA ASFGASAVST STNTNASTTV  120
FAAHKILEEH DMRRPCKNIF SNMIQISPNA KLPVSPYDST TAVAPSPRAI KPPAVVSPNM  180
VNANSSKDCL VDTTGVQISS PRNPGLKRRC GGVKFYESSY GEVCTVERKK NQAKKVVCIP  240
APAAANSRQT GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP  300
NMLVITYTSE HNHPWPTQRN ALAGSTSASV KEENMEDIEK QFEMDEGEFS DGLPYKPCLM  360
DQSNNQSEDF FAELGEIEAD PLDILFTQGF GAADDQREES KALDPFHLFD WSGDNNTSTN  420
SSSFEEPNAK RRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25230317280Disease resistance protein RRS1
5w3x_D4e-25230317280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g06090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642802.10.0probable WRKY transcription factor 14
SwissprotQ9SA805e-85WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A3Q0FKS70.0A0A3Q0FKS7_VIGRR; probable WRKY transcription factor 14
STRINGXP_007147420.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.19e-82WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]