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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g05430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GeBP | ||||||||
Protein Properties | Length: 288aa MW: 32508.2 Da PI: 4.2565 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 84.3 | 1.7e-26 | 107 | 169 | 2 | 64 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkK 64 lfqrlw++eDei lLqG++d+++++g+s ++d+ fy+++k++++++++k+qlveKirrLKkK Vradi10g05430.1 107 LFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKK 169 79************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.9E-22 | 108 | 169 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASQQHDAVF REEDMDDDDE SQEDEEFEEE DDVLAADDEE NESSPSTALA VTVAVPGSAI 60 SNGGGTPLST PTATTIVIGD SSDPKRRRLE PIEEKKPPPP LDDSRRLFQR LWTDEDEIEL 120 LQGFLDYTSQ RGSSHHNDTA LFYDQIKSKL QLDFNKNQLV EKIRRLKKKE LVGAMGGGAF 180 GGRGVSLNLN PIPLMNLSYG GGELVDEKWR KQQILELEVY SKRLELVQDQ IKAAMEELRS 240 RVQAQWNGLF IYAASDWGWK LFEFWMLNPS QMGQFVSLIT ISGQFWF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 88 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g05430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553753.1 | 4e-86 | probable transcription factor At3g04930 | ||||
Refseq | XP_028218581.1 | 4e-86 | probable transcription factor At3g04930 | ||||
Swissprot | Q9CAV7 | 2e-38 | STKLJ_ARATH; Probable transcription factor At3g04930 | ||||
TrEMBL | A0A445FL00 | 9e-85 | A0A445FL00_GLYSO; Putative transcription factor | ||||
TrEMBL | I1NC70 | 9e-85 | I1NC70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G43180.1 | 1e-85 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-32 | DNA-binding storekeeper protein-related transcriptional regulator |