PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03380.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 413aa    MW: 46439.8 Da    PI: 9.5267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-19128174148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++vkq+G+g W+ Ia+ +  gR +kqc++rw+++l
  Vradi10g03380.1 128 KGQWTEEEDRKLVKLVKQHGTGKWSQIAENLD-GRAGKQCRERWHNHL 174
                      799*****************************.*************97 PP
2Myb_DNA-binding54.82.2e-17180222145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+++lv++++++G++ W+ Ia+ +  gRt++ +k++w+
  Vradi10g03380.1 180 KDAWSEEEEKILVKYHAEFGNR-WAEIAKQIK-GRTENAIKNHWN 222
                      679*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.718123178IPR017930Myb domain
SuperFamilySSF466891.47E-30125221IPR009057Homeodomain-like
SMARTSM007171.4E-17127176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-28129181IPR009057Homeodomain-like
PfamPF139212.0E-20131189No hitNo description
CDDcd001671.23E-15131174No hitNo description
PROSITE profilePS5129420.361179229IPR017930Myb domain
SMARTSM007177.2E-16179227IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-21182227IPR009057Homeodomain-like
CDDcd001674.14E-12182225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKDIEGGGAI INGSNPSKSS VGPPLTAIER FLWGQQSHSS QQQPQNVANN IHASVLDGFG  60
GSNYNIFWHN GGREVNFVEK ILANEVEALN WTQQVPPLCL TEDLHVSGKN RKGVGRKPKE  120
GSSVPWIKGQ WTEEEDRKLV KLVKQHGTGK WSQIAENLDG RAGKQCRERW HNHLRPDIKK  180
DAWSEEEEKI LVKYHAEFGN RWAEIAKQIK GRTENAIKNH WNATKRRQNS RRKNKRAGIG  240
NGKPLSSILQ DYIKTLSLTN TSTSSVEQTL PSKHLSHVDV ATNNNFSLMS DDISFMQQFF  300
DQNNVIAESV KQTKTFNNSS APFDAYHHQS SNNTHFLTEL TQSGSVLHSN QMSFDESLFL  360
SKRTPLGFDI SLSHLHNGTA ASSFLCNNGI HNQNMELQVE KQNWLWERGI GI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-411272283104C-Myb DNA-Binding Domain
1msf_C2e-411272283104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224235KRRQNSRRKNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517297.10.0transcription factor MYB119-like
TrEMBLA0A1S3VGF50.0A0A1S3VGF5_VIGRR; transcription factor MYB119-like
STRINGXP_007146726.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-53myb domain protein 119