PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g02560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 534aa    MW: 58012.5 Da    PI: 7.8907
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g02560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32227284260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Vradi10g02560.1 227 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 284
                      8****************************************.***************85 PP
2WRKY105.82.2e-33350408159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  Vradi10g02560.1 350 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHD 408
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27221285IPR003657WRKY domain
PROSITE profilePS5081123.835221285IPR003657WRKY domain
SuperFamilySSF1182903.4E-25223285IPR003657WRKY domain
SMARTSM007744.1E-34226284IPR003657WRKY domain
PfamPF031061.5E-24227283IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37335410IPR003657WRKY domain
SuperFamilySSF1182902.09E-29342410IPR003657WRKY domain
PROSITE profilePS5081138.664345410IPR003657WRKY domain
SMARTSM007743.5E-39350409IPR003657WRKY domain
PfamPF031064.0E-26351408IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDTAEALSDD PNRPGSRPNS APDAAPAGGG ARYKLMSPAK LPISRSPCVT IPPGLSPTSF  60
LESPVLLSNM KVEPSPTTGS LFMLHQTAHA SVTSSASASF PVTTASFNTN TIDDRKPSFF  120
EFKPHSRPNM VPADPNNHAS EKSTQIDGEG KTQPFDSSPL VKSEIAVPSN ELSLSSPVQI  180
VSSGANARVE GDLDELNPRS NIANGLQASN IDNKGSGLSV AAERVSDDGY NWRKYGQKHV  240
KGSEFPRSYY KCTHPNCEVK KLFERSHDGQ ITEIIYKGTH DHPKPQPNRR YSSGTMMTMQ  300
EERSDKASFR DEVFLLSRKM ELANADITPV VKPIREPRVV VQTLSEVDIL DDGYRWRKYG  360
QKVVRGNPNP RSYYKCTNTG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TARNNSCHEI  420
AGSASAASGQ TRIRPEESDT ISLDLGMGIS PASENTPNSQ GRMMLPEFGD SQAHTSNSNF  480
KFVHTSGAPV YFGVLNNNSN PYGSKENPSD SSTSLNHSAY PCPQNVGRIL MGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37216410677Probable WRKY transcription factor 4
2lex_A4e-37216410677Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g02560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5203900.0KM520390.1 Macrotyloma uniflorum WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518733.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-169WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S3VK360.0A0A1S3VK36_VIGRR; probable WRKY transcription factor 20
STRINGXP_007146592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-165WRKY family protein