PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g02120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28172.7 Da    PI: 10.0349
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g02120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.6e-312473150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Vradi10g02120.1 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 73
                     79***********************************************8 PP
2K-box105.85.1e-35931885100
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +s++e +++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le +Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k+
  Vradi10g02120.1  93 NAESVSEVNTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKI 186
                      344599***************************************************************************************9 PP

            K-box  99 ee 100
                      +e
  Vradi10g02120.1 187 AE 188
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.9641676IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-421675IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-331794IPR002100Transcription factor, MADS-box
CDDcd002651.67E-441791No hitNo description
PRINTSPR004046.3E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.0E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-335374IPR002100Transcription factor, MADS-box
PfamPF014865.1E-25101186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.446102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MELPNQAQEG SSQKKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
VVFSSRGRLY EYANNSVRAT IERYKKASAA STNAESVSEV NTQFYQQESS KLRRQIRDIQ  120
NLNRHILGEA LGSLSLKELK NLEGRLEKGL SRVRSRKHET LFADVEFMQK REIELQNHNN  180
YLRAKIAEHE RAQQQQQQQQ TNMTQGTLCE SLPSQSYDRN FFPVNLIGSD QQYSRQDQTA  240
LQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-2116101189MEF2C
5f28_B3e-2116101189MEF2C
5f28_C3e-2116101189MEF2C
5f28_D3e-2116101189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g02120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525640.0EU252564.1 Glycine max agamous-like 1 protein (AGL1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642935.11e-180agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_022642936.11e-180agamous-like MADS-box protein AGL1 isoform X2
SwissprotQ93XH41e-122MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A3Q0FGW51e-178A0A3Q0FGW5_VIGRR; agamous-like MADS-box protein AGL1 isoform X1
STRINGXP_004513719.11e-157(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]