PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi1013s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 304aa    MW: 34033.6 Da    PI: 8.0193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi1013s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed++l+d+v+++G g W++++++ g+ R++k+c++rw +yl
  Vradi1013s00010.1 14 KGPWTPDEDKKLLDYVRKHGHGIWRSVPAKAGLERCGKSCRLRWINYL 61
                       79********************************************97 PP
2Myb_DNA-binding49.97.1e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++++eE+  +++++++lG++ W+ Ia++++  Rt++++k++w++
  Vradi1013s00010.1  67 RGNFSAEEEHTIIQLHALLGNK-WSIIAAHLP-QRTDNEIKNYWNS 110
                        89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.895961IPR017930Myb domain
SuperFamilySSF466892.35E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-161461IPR001005SANT/Myb domain
CDDcd001679.68E-121661No hitNo description
PROSITE profilePS5129424.49362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565117IPR009057Homeodomain-like
SMARTSM007173.0E-1366114IPR001005SANT/Myb domain
PfamPF002497.4E-1567110IPR001005SANT/Myb domain
CDDcd001674.79E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPD EDKKLLDYVR KHGHGIWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF SAEEEHTIIQ LHALLGNKWS IIAAHLPQRT DNEIKNYWNS NIKKRLIRMG  120
LDPITHKTIK KNTFETSDVC YDNPKDTINV CHVAQWESAR HEAEVRGSMV QAGSGSSYFS  180
GLILSKIPTQ PCLSSHSLST ENSTAYNMYA LVLATNHDFR LPVSTSSIPT LPAVSNIPQI  240
TNTESLVSYK VDNNDMGASS QSETEIEGCV SNLQDDDIMV AVEAFRRTRS ESMKELFNES  300
TSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi1013s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492289.10.0transcription factor MYB106-like
SwissprotQ9LE631e-81MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3TEV50.0A0A1S3TEV5_VIGRR; transcription factor MYB106-like
STRINGXP_007153565.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-82myb domain protein 16