PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g07980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 204aa    MW: 23450.5 Da    PI: 7.9708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g07980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.3e-151994271
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergf.erspkqCkekwenlnkrykkikegekkr 71
                     Wt+qe+ +Li+a++e++ +l+rg l+ ++Weev+  +      +  +  +s+ qC++k+e+l++r++++k++    
  Vradi09g07980.1 19 WTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVIVaarcgYDLAYpAKSALQCRHKMEKLRQRHRAEKKNVTAT 94
                     **********************************9998666655566678*******************9987764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-1518107No hitNo description
PROSITE profilePS500906.041881IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATPNDAVSP TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVIVAARCG  60
YDLAYPAKSA LQCRHKMEKL RQRHRAEKKN VTATLRPAAW QYNALMEDLE CGPLPISALA  120
PFRNDTDSDP DDDGTYRNGN DGDESFVKSK SINCTLGERP VRMRNGERGF LRERSEEERD  180
EIVKSIMIEI SSEWFLLWKS PQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g07980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515082.11e-136trihelix transcription factor ASIL1
TrEMBLA0A1S3VA481e-135A0A1S3VA48_VIGRR; trihelix transcription factor ASIL1
STRINGXP_007134090.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-25Trihelix family protein