PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g07710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 321aa    MW: 34249.3 Da    PI: 8.0453
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g07710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.6e-3867126362
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  Vradi09g07710.1  67 EVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 126
                      5679*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3350119IPR003851Zinc finger, Dof-type
PfamPF027012.5E-3269124IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.29270124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361072108IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVFTSIPDSY FDASNWHQPG GSDSNSQQLL QPPPPPLTVA MQSHGEGSIR PGSMADRARM  60
ANMPMPEVAL KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RSVPVGGGCR  120
RNKRSKGTGG SGGGSNSPAT SDLVGSSKSE RIGLAPQIPP FRFMPPLHQL GEFGDGDISL  180
NYGLSYGPVG GVGDLSYQIG TSALCGGATS IFTAPGFDQW RMPQQFPFLA SLEGSSPASN  240
LYPFDGSAEV SGYIRPKVST SGIMAQIASV KMEERKEPDL STLFLGNDNP VNEQYWTSAS  300
SASWTDISGI SSSFAASNHL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g07710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515560.10.0dof zinc finger protein DOF5.1-like
TrEMBLA0A1S3VBC00.0A0A1S3VBC0_VIGRR; dof zinc finger protein DOF5.1-like
STRINGXP_007134031.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.22e-53OBF-binding protein 3