PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi09g06090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 292aa MW: 32952.5 Da PI: 8.4163 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.3e-13 | 142 | 191 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i + +eeL +lP l+K++iL k+++Y+k+Lq Vradi09g06090.1 142 QHIMAERKRREKISTMMEELSAMLPVkY---LYVQLDKISILGKTIDYVKHLQ 191 699***********************77...8999*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-15 | 133 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.738 | 138 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 141 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.80E-13 | 143 | 194 | No hit | No description |
SMART | SM00353 | 1.4E-12 | 144 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MVHSHGVTFV NRLLSIFPWC QRFCTHLFEG REKVDIDPPN SKEMNDDELH LFNEHDVNSL 60 EEELMKGEST SGFDINNKKK NNIDGGSCLK TNTQHANSGS EKHICSSCTL AFEDSTVVSN 120 VADEALHAKP EKKRSTFHQM NQHIMAERKR REKISTMMEE LSAMLPVKYL YVQLDKISIL 180 GKTIDYVKHL QNRVNDLQEQ KRKTESKCSK NNGSNVNISE NFPKVDASVS GKDVRIRVIC 240 DRRQHIVAKL FSKLESHHLS IVRSSVLPLG SSALNISIIC QVQSNVIHAK G* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 131 | 150 | KKRSTFHQMNQHIMAERKRR |
2 | 146 | 151 | ERKRRE |
3 | 147 | 152 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi09g06090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-159 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516222.1 | 1e-165 | transcription factor bHLH18-like | ||||
TrEMBL | A0A1S3VDD5 | 1e-164 | A0A1S3VDD5_VIGRR; transcription factor bHLH18-like | ||||
STRING | XP_007134384.1 | 6e-85 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18248 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-21 | bHLH family protein |