PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 193aa MW: 20698.1 Da PI: 6.8073

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi09g05630.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.5e-18	120	169	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd ng r++lg++ tae+Aa a+++a+ +++g Vradi09g05630.1 120 YRGVRRRP-WGKFAAEIRDaK-RNG--VRVWLGTYETAEDAALAYDRAAFRMHG 169 9*****.******43.344..************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.7E-31	119	178	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.13	119	177	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-35	119	183	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	120	178	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-10	120	131	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-13	120	169	IPR001471	AP2/ERF domain
CDD	cd00018	6.45E-29	120	179	No hit	No description
PRINTS	PR00367	1.2E-10	143	159	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MNPHASNTHL NAPHLSDLPA TTPFQDASPS LWPTALSSRS SSFRSIFSAE NWAELPLKED 60 DADDMVIYGT LLEAAATTGW FPENGSGVSK VAVKKENGGE SSGTKGGSGT HAPPVKGLSY 120 RGVRRRPWGK FAAEIRDAKR NGVRVWLGTY ETAEDAALAY DRAAFRMHGS KAKLNFPHLI 180 GIPMMDGEEV AE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-30	116	177	2	63	ATERF1
3gcc_A	5e-30	116	177	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:11950980}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00311	DAP	Transfer from AT2G44840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi09g05630.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269\|PubMed:11950980, ECO:0000269\|PubMed:12068110}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022641612.1	1e-131	ethylene-responsive transcription factor 13-like
Swissprot	Q8L9K1	2e-51	ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBL	A0A3Q0FH11	1e-129	A0A3Q0FH11_VIGRR; ethylene-responsive transcription factor 13-like
STRING	GLYMA07G13980.2	2e-87	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2239	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	8e-40	ethylene-responsive element binding factor 13

Publications ? help Back to Top
Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum. Plant Physiol., 2007. 145(4): p. 1588-99 [PMID:17965181] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]