PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05440.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 321aa    MW: 36512.2 Da    PI: 6.0799
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131863146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
  Vradi09g05440.1 18 KGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 63
                     79*************************8887799**********87 PP
2Myb_DNA-binding40.46.9e-1374113344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+ + +++ +q+G++ W++Ia+ +  gRt++++k++w
  Vradi09g05440.1  74 KFSLEEERIVIELQAQFGNR-WAKIASFLS-GRTDNDVKNFW 113
                      799*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-211166IPR009057Homeodomain-like
PROSITE profilePS5129419.881369IPR017930Myb domain
SuperFamilySSF466898.98E-2816113IPR009057Homeodomain-like
SMARTSM007176.9E-111767IPR001005SANT/Myb domain
CDDcd001672.22E-112065No hitNo description
PfamPF139214.5E-122171No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1767119IPR009057Homeodomain-like
PROSITE profilePS5129416.9670121IPR017930Myb domain
SMARTSM007172.6E-1271119IPR001005SANT/Myb domain
CDDcd001672.08E-1074113No hitNo description
PfamPF002495.1E-1174113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MHARKMHGKK EQEEYIRKGP WKAEEDEVLL NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR  60
WVNKLRPNLK NGCKFSLEEE RIVIELQAQF GNRWAKIASF LSGRTDNDVK NFWSSRQKRL  120
ARILQTSGTT SKSQKNKTKV PTLLDVPTLE APKFSSSSEG ESSSKPQSYS LPLIENSEVI  180
KMVSLPDLIK SELPSSDPIH VEQGFTPFES YNSSEQIQQI SFPQIPELQN DLTFPMGSQD  240
VLARIDEPYF VDDYCALDDA SEFGIGLQHP IGFPFFEPPG SCRIETRDTI DKFKSSDSFF  300
DDFPVDMFDQ MDPPASPSYL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271611925126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515433.20.0transcription factor DUO1
SwissprotA0A178VEK79e-82DUO1_ARATH; Transcription factor DUO1
TrEMBLA0A1S3VAQ90.0A0A1S3VAQ9_VIGRR; transcription factor DUO1
STRINGXP_007134506.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-71MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]