PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 866aa    MW: 99143 Da    PI: 8.1388
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.32.2e-0743133790
             FAR1   7 AkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Ake GF + + +s++s       +rn++ t   + C ++gk +   k+ e +++ +++ +++C  +l+ k  k  + w v+ +   HnHel 
  Vradi09g05000.1  43 AKENGFVLIILRSETStkptrttRRNQRKTFVILGCDRSGKYRGLYKN-ELSQKVNSTRKCECPFRLRGKALKkAEGWTVKVMCGCHNHELE 133
                      77788888777777776666444666666666677********99999.8899999999999999999998777999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-543133IPR004330FAR1 DNA binding domain
PfamPF105511.0E-22245341IPR018289MULE transposase domain
PROSITE profilePS5080211.253679814IPR003323OTU domain
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MSKEVNEQIV GATNNSVDCS DAFNTTEIFP SRDAMLNWAR DVAKENGFVL IILRSETSTK  60
PTRTTRRNQR KTFVILGCDR SGKYRGLYKN ELSQKVNSTR KCECPFRLRG KALKKAEGWT  120
VKVMCGCHNH ELEETLVGHP YAGRLSAEEK SLVDDMTKNM MKPKDILLTL KDYNMDNVTT  180
IKQIYNARHA YRSSQKGLEM QYLLKLLERE RYVYWHRKVD DSNVIRDIFW THPDAIKLLG  240
AFNTVLIIDS IYTTTRYPLP LLEIVGVTST ELTFSVAFAF VESELADNFT WALQKLRGLI  300
VKDEDIPQVI VTNRDISLMN AVQVVFPSSC NLLCRSHINK NVKSKCMSIV HPKEKQELVM  360
NAWDVVVNSS NESEYMQRLA LFEKVCSGFP NFGEYVKNMW LIPHKEKFVT SWTNQVMHLG  420
NTTTDRVEST NCKLKNLLQD SKEDMCSYWD AMNDMITLQH TEIKLSFEKS INVVDHMHNT  480
PLYIKLQGLV SWSALSHITD EYDRVKAVGT DSSKCYCIVR TTHGLPCACE LAKYSTMCHP  540
VPLEAIHVHW KKLNFIDGGM NDEEYELSLQ PELDALLKRF QELDCAGKLV LKAKLHELAF  600
PDTTSKCPTP TVVRIKGAAK RDRSIHSDIS QWGHVDAMRP THSGSSSCPS SHQLVHDSKR  660
RRVLSMMDQF PIQIHPFIEE IIDVKADSNC GYRAVAAQLG MGEESWALVR QDLIRELQQW  720
QDIYAKLFGS NDRVAELRQS LYVDKETSIK KWMTIPDMGY VIASRYNVVL VALSLKESMT  780
FFPLRGRPPL SESRHRLIAI GLVHDCHFVQ VALKAESPLP PTALQWSRYC SAESRSWETS  840
YVIRMEHFRS LFPQKRNDYV NVIGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1658662KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516402.10.0PKS-NRPS hybrid synthetase CHGG_01239-like
RefseqXP_014516403.10.0PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBLA0A1S3VDX10.0A0A1S3VDX1_VIGRR; PKS-NRPS hybrid synthetase CHGG_01239-like
STRINGXP_007139082.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-15FAR1 family protein