PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi09g03960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 152aa MW: 17453.9 Da PI: 10.0373 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.1 | 2e-29 | 61 | 118 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk++ +p sYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Vradi09g03960.1 61 LDDGYRWRKYGQKAVKNNMHP-SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 118 59******************9.9***********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-31 | 47 | 118 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 54 | 119 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.637 | 56 | 120 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-34 | 61 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-23 | 62 | 118 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence Send to blast |
MESQDPPNPS PFVFTPTSMM QNPLEPQGLQ DDIDWKRKGG RVKKTTRPRF AFQTRSADDI 60 LDDGYRWRKY GQKAVKNNMH PSYYRCTHHT CNVKKQVQRL SKDTSIVVTT YEGIHNHPCE 120 KLMETLTPLL KQMQFLSRLA SNNNTSPASL L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-23 | 51 | 117 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 8e-23 | 51 | 117 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi09g03960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 2e-98 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014515390.1 | 1e-101 | probable WRKY transcription factor 24 | ||||
Swissprot | Q8VWQ4 | 1e-53 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A1S3VAV8 | 2e-99 | A0A1S3VAV8_VIGRR; probable WRKY transcription factor 24 | ||||
STRING | XP_007135144.1 | 6e-92 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64000.1 | 6e-55 | WRKY DNA-binding protein 56 |