PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 325aa    MW: 36961.7 Da    PI: 8.1282
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.23.8e-2563107145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Vradi09g02480.1  63 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 107
                      79****************************************985 PP
2QLQ54.73.1e-191247136
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Vradi09g02480.1 12 SPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIK 47
                     89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-111248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-141346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.2171348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32563107IPR014977WRC domain
PfamPF088792.9E-2164106IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMSATATARN RSPFTPSQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRIG WGCFEMGFGR  60
KVDPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGRNR SRKPVEVSSA TSTATNTSQT  120
IPSYTRNLSL ANPTITSPSF PFSPLPSSMP CDSQPFSHSY QNPSLNPFFY AQSTSSRPPD  180
SDFSPQDATT HQLFMDSASY SHDEKDYRHV HGIREDVDER AFFPEASGSA RNYSDSYQPL  240
SMSSYKSYSN SSFQNINDAT NQRQQEQQHC FVLGTDFKST RPSKEKEAET TSQRPLHRFF  300
GEWPPKNTDS WLDLASNSRI PTDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405895.10.0PREDICTED: growth-regulating factor 5-like isoform X3
TrEMBLA0A0S3SZU00.0A0A0S3SZU0_PHAAN; Uncharacterized protein
STRINGXP_007135443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-51growth-regulating factor 5