PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 293aa    MW: 33211 Da    PI: 6.9305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l ++++ +G g W+  +++ g++R++k+c++rw++yl
  Vradi09g02450.1 14 KGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.32.7e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  Vradi09g02450.1  67 RGNITNDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.925961IPR017930Myb domain
SuperFamilySSF466894.21E-2812108IPR009057Homeodomain-like
SMARTSM007176.8E-131363IPR001005SANT/Myb domain
PfamPF002497.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-221568IPR009057Homeodomain-like
CDDcd001673.90E-91661No hitNo description
PROSITE profilePS5129423.89362116IPR017930Myb domain
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2469116IPR009057Homeodomain-like
CDDcd001676.75E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPCCSKE GLNKGAWTAL EDKILTEYIN IHGEGKWRHL PKRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI TNDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRKLQNGT  120
PGYSITNGGA RSTLNTVQHD QNVKNQEWQY DKGSCLVQTK ATRWSKVTVS DEISHHNDED  180
NNSNVGDHKK MKAFLVSPSS ESNNDPVLNF MENLEMDGSF FSELLKMDFP ESSCQGNKIL  240
EDNDNPSSVE KGYLSPKSSC ETTHFSWGDS LYDPNFEFLP VTTFTETGFD WL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515267.10.0myb-related protein 308-like
TrEMBLA0A1S3VAM70.0A0A1S3VAM7_VIGRR; myb-related protein 308-like
STRINGXP_007135450.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.16e-62myb domain protein 3