PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g01800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 372aa    MW: 40644.2 Da    PI: 7.1027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g01800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07285325954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Vradi09g01800.1 285 ARHRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 325
                      599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.964276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-13281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-11282333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5286325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.18E-5298330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDGLSWDTSQ LEANTPILWS TIQPPPDFEG GYSMPNVVNQ IQDLQKAQTG HADSNSERVI  60
YQSADATTAS SEIMDEMQRQ NTNLLQHAPT MMPVKSGTGA SWGEAFTSQS YPYGSAASTG  120
ESESNASNGR KEDMKCPVNE VDETVSQSSL DRGKTVQSKA NCSKRSHEET KTIKVGATGR  180
GSCFSIVQNS SSVEQGGFRL ISDDPSKSKK PRWEKSSSSN NINFQQPNSS MSSSIEEPDP  240
EAIAQMKEMI YRAAAFRPVN FGLDAAEKPK RKNVRISTDP QTVAARHRRE RISERIRVLQ  300
KLVPGGSKMD TASMLDEAAN YLKFLRSQVK ALECLGNKVD AMNCPPTSIA FSFNPSFPMQ  360
TSLSQIHHSQ G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g01800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515202.11e-179transcription factor bHLH87-like, partial
SwissprotQ8S3D27e-73BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1S3VAG31e-177A0A1S3VAG3_VIGRR; transcription factor bHLH87-like
STRINGXP_007135604.11e-162(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]